Research skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

nlp-analysis

Natural language processing for research including text mining, sentiment analysis, topic modeling, named entity recognition, text classification, and corpus analysis. Use when user needs to analyze text data, extract information from documents, do sentiment analysis, topic modeling, or text classification for research purposes. Triggers on "text mining", "sentiment analysis", "topic modeling", "NER", "named entity", "text classification", "word embeddings", "LDA", "corpus analysis", "word frequency", "TF-IDF".

866 repo starsObserved in 3 repos
Research
GitHub

nltk-linguistics

NLP and corpus analysis via NLTK. Use when: user asks about tokenization, POS tagging, parsing, sentiment, or corpus statistics. NOT for: deep learning NLP or transformer models.

866 repo starsObserved in 3 repos
Research
GitHub

open-targets

Query the Open Targets Platform GraphQL API for gene-drug-disease associations, evidence scores, and therapeutic target validation. Use when the user needs disease associations for a gene, drug evidence for a target, or target prioritization for a disease. NOT for compound property lookup (use pubchem-compound), NOT for bioactivity measurements (use chembl-drug), NOT for protein 3D structures (use pdb-structure).

866 repo starsObserved in 3 repos
Research
GitHub

pdb-structure

Query the RCSB PDB API for protein 3D structures, experimental metadata, and structure files. Use when the user needs crystal or cryo-EM structure data, PDB entries, resolution info, or structure file downloads. NOT for protein sequences/annotations (use UniProt), gene data (use NCBI), or pathway info (use KEGG).

866 repo starsObserved in 3 repos
Research
GitHub

political-science

Analyze political data, fact-check claims, and study policy impacts using evidence-based methods

866 repo starsObserved in 3 repos
Research
GitHub

pubchem-compound

Search and retrieve chemical compound data from PubChem's PUG REST API (110M+ compounds). Use when the user needs compound properties, molecular structures, similarity searches, substructure searches, or bioactivity data. NOT for protein structures (use pdb-structure), NOT for drug-target interactions (use chembl-drug), NOT for gene-disease associations (use open-targets).

866 repo starsObserved in 3 repos
Research
GitHub

reproducibility

Promotes research reproducibility through guidance on pre-registration, open data/code sharing, replication study design, computational reproducibility, and open science best practices; trigger when users discuss replication, open science, pre-registration, data sharing, or research transparency.

866 repo starsObserved in 3 repos
Research
GitHub

scanpy-singlecell

Single-cell RNA-seq analysis with scanpy and anndata. Use when: (1) scRNA-seq preprocessing and QC, (2) clustering and cell type annotation, (3) differential expression analysis, (4) trajectory and pseudotime analysis, (5) UMAP/tSNE visualization. NOT for: bulk RNA-seq differential expression (use DESeq2/edgeR), protein structure analysis (use pdb-structure), or imaging data.

866 repo starsObserved in 3 repos
Research
GitHub

scienceclaw-classification

Classify scientific content by discipline, methodology, topic, and quality. Use when: user asks to categorize papers, methods, or research outputs. NOT for: simple keyword tagging or non-scientific content.

866 repo starsObserved in 3 repos
Research
GitHub