Research skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

fact-verification

Verify scientific claims, political statements, and environmental assertions against evidence

866 repo starsObserved in 3 repos
Research

genomics-analysis

Orchestrates a genomics analysis workflow from gene query through expression analysis to pathway enrichment. Use when investigating gene function, analyzing expression data, or performing pathway-level interpretation. NOT for pure protein structure modeling or drug-target interaction analysis.

866 repo starsObserved in 3 repos
Research

geopandas-spatial

Geospatial and climate data analysis with geopandas and xarray. Use when: (1) geographic vector data analysis, (2) climate and weather NetCDF data, (3) spatial joins and overlay operations, (4) map visualization, (5) CRS transformations and area calculations. NOT for: satellite imagery ML (use rasterio/torchgeo), real-time GPS tracking, or interactive web maps (use folium/leaflet directly).

866 repo starsObserved in 3 repos
Research

knowledge-discovery

Discover patterns, build knowledge graphs, and extract insights from linguistic and historical data

866 repo starsObserved in 3 repos
Research

linguistics-analysis

Analyze language structures, typological features, and semantic change across languages

866 repo starsObserved in 3 repos
Research

materials-project

Query the Materials Project API v3 for crystal structures, band gaps, formation energies, and thermodynamic stability of 150k+ inorganic materials. Use when: (1) searching materials by chemical formula, (2) looking up material properties by MP ID, (3) filtering materials by band gap, energy, or density, (4) finding stable phases for a composition. NOT for: organic molecules (use pubchem-compound), proteins (use uniprot-protein), drug compounds (use chembl-drug).

866 repo starsObserved in 3 repos
Research

meta-analysis

Perform quantitative meta-analysis with effect size calculation, forest plots, funnel plots, and heterogeneity assessment. Use when: user asks to combine results from multiple studies, calculate pooled effect sizes, assess publication bias, or create forest/funnel plots. NOT for: systematic review protocol (use systematic-review) or single-study statistics (use statsmodels-stats).

866 repo starsObserved in 3 repos
Research

ncbi-entrez

Query NCBI E-utilities for GenBank sequences, gene info, SNPs, ClinVar variants, and literature links. Use when the user needs nucleotide/protein sequences from GenBank, gene summaries, variant data, or cross-database links. NOT for protein annotations (use UniProt), 3D structures (use PDB), or pathway mapping (use KEGG).

866 repo starsObserved in 3 repos
Research

networkx-social

Social network and graph analysis via NetworkX. Use when: graph analysis, community detection, centrality measures, network visualization, knowledge graphs, bipartite networks, graph I/O. NOT for: large-scale graph processing (>1M nodes), GPU graph analytics (use cuGraph).

866 repo starsObserved in 3 repos
Research