database-troubleshooting
Database Connection Troubleshooting
2.86k repo starsObserved in 1 repos
Testing & Quality
Testing & Quality skills
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
bio-rnaseq-qc
RNA-seq specific quality control including rRNA contamination detection, strandedness verification, gene body coverage, and transcript integrity metrics. Use when validating RNA-seq libraries before differential expression analysis.
2.85k repo starsObserved in 17 repos
Testing & Quality
bio-atac-seq-atac-qc
Quality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity. Use when assessing ATAC-seq library quality before or after peak calling to identify problematic samples.
2.85k repo starsObserved in 16 repos
Testing & Quality
bio-flow-cytometry-cytometry-qc
Comprehensive quality control for flow cytometry and CyTOF data. Covers flow rate stability, signal drift, margin events, dead cell exclusion, and batch QC. Use when assessing acquisition quality or identifying problematic samples before analysis.
2.85k repo starsObserved in 16 repos
Testing & Quality
bio-ribo-seq-ribosome-periodicity
Validate Ribo-seq data quality by checking 3-nucleotide periodicity and calculating P-site offsets. Use when assessing library quality or determining read offsets for downstream analysis.
2.85k repo starsObserved in 16 repos
Testing & Quality
convergence-study
Spatial and temporal convergence analysis with Richardson extrapolation and Grid Convergence Index (GCI) for solution verification
2.85k repo starsObserved in 16 repos
Testing & Quality
bio-chipseq-qc
ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate concordance. Use to assess experiment quality before downstream analysis. Use when assessing ChIP-seq data quality metrics.
2.85k repo starsObserved in 15 repos
Testing & Quality
bio-crispr-screens-screen-qc
Quality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery. Use when assessing screen quality before hit calling or diagnosing poor screen performance.
2.85k repo starsObserved in 14 repos
Testing & Quality
ontology-validator
Validate material sample annotations and data structures against ontology constraints. Use when checking if CMSO annotations are correct, verifying that required properties are present, or validating that object property relationships have consistent domain and range. Catches unknown classes, unknown properties, domain mismatches, and missing required fields.
2.85k repo starsObserved in 13 repos
Testing & Quality
create-playwright-page-model
Use when creating a Playwright page object model for a ZKEACMS page from a URL or live page inspection.
2.84k repo starsObserved in 1 repos
Testing & Quality