ensembl-sequence-retrieval
Retrieve genomic sequences from Ensembl database using transcript or gene IDs to obtain nucleotide and protein sequences.
384 repo starsObserved in 1 repos
Research
Research skills
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
epigenomic_landscape
Epigenomic Landscape Mapping - Map epigenomic landscape: overlapping features, regulatory elements, binding matrices, and phenotype links. Use this skill for epigenomics tasks involving get overlap region get phenotype region get species binding matrix get track data. Combines 4 tools from 2 SCP server(s).
384 repo starsObserved in 1 repos
Research
fda-drug-risk-assessment
Assess drug risks and adverse effects using FDA drug database to retrieve safety information and risk profiles.
384 repo starsObserved in 1 repos
Research
gene_expression_atlas
Gene Expression Atlas - Build gene expression atlas: TCGA cancer expression, NCBI gene info, Ensembl gene details, and literature search. Use this skill for transcriptomics tasks involving get gene expression across cancers get gene metadata by gene name get lookup symbol search literature. Combines 4 tools from 4 SCP server(s).
384 repo starsObserved in 1 repos
Research
gene_family_evolution
Gene Family Evolution Analysis - Analyze gene family evolution: CAFE gene tree, homology, Ensembl gene tree, and taxonomy. Use this skill for molecular evolution tasks involving get cafe genetree member symbol get homology symbol get genetree member symbol get taxonomy classification. Combines 4 tools from 1 SCP server(s).
384 repo starsObserved in 1 repos
Research
kegg-gene-search
Search KEGG database for gene information to retrieve pathway associations, functional annotations, and disease links.
384 repo starsObserved in 1 repos
Research
metabolomics_pathway
Metabolomics Pathway Analysis - Analyze metabolomics: compound identification, KEGG pathway mapping, enzyme links, and PubChem data. Use this skill for metabolomics tasks involving search pubchem by name kegg find kegg link kegg get. Combines 4 tools from 2 SCP server(s).
384 repo starsObserved in 1 repos
Research
mouse_model_analysis
Mouse Model Disease Analysis - Analyze mouse disease models: MouseMine search, NCBI mouse gene data, Ensembl cross-species comparison, and orthologs. Use this skill for model organisms tasks involving mousemine search get gene metadata by gene name get homology symbol get gene orthologs. Combines 4 tools from 3 SCP server(s).
384 repo starsObserved in 1 repos
Research
ncbi_gene_deep_dive
NCBI Gene Deep Dive - Deep dive into NCBI gene: metadata, dataset report, product report, orthologs, and gene links. Use this skill for gene biology tasks involving get gene metadata by gene name get gene dataset report by id get gene product report by id get gene orthologs get gene links by id. Combines 5 tools from 1 SCP server(s).
384 repo starsObserved in 1 repos
Research
organism_classification
Organism Classification & Database - Classify organism: NCBI taxonomy, Ensembl taxonomy, ChEMBL organisms, and genome info. Use this skill for taxonomy tasks involving get taxonomy get taxonomy id get organism by id get genome dataset report by taxon. Combines 4 tools from 3 SCP server(s).
384 repo starsObserved in 1 repos
Research