interproscan-domain-analysis
Analyze protein sequences using InterProScan to identify functional domains, protein families, and Gene Ontology (GO) annotations.
384 repo starsObserved in 4 repos
Research
Research skills
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
region-gene-elements
Query IGVF Catalog for regulatory element–gene associations within a genomic region, including association scores, element types, and biosample context.
384 repo starsObserved in 4 repos
Research
variant-gwas-associations
Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
384 repo starsObserved in 4 repos
Research
variant-pharmacogenomics
Query PharmGKB (clinPGx) for pharmacogenomic clinical annotations — how a variant affects drug response, dosing, and adverse reactions.
384 repo starsObserved in 4 repos
Research
variant-population-frequency
Query gnomAD for variant allele frequency across populations. Uses FAVOR to convert rsID→variant_id first, then queries gnomAD.
384 repo starsObserved in 4 repos
Research
variant-clinical-significance
Query NCBI ClinVar for variant clinical pathogenicity classification (Pathogenic/Benign/VUS), review status and associated diseases.
384 repo starsObserved in 3 repos
Research
admet_druglikeness_report
ADMET & Drug-Likeness Report - Generate comprehensive ADMET and drug-likeness report: molecular properties, H-bond analysis, hydrophobicity, topology, and ADMET prediction. Use this skill for medicinal chemistry tasks involving calculate mol basic info calculate mol hbond calculate mol hydrophobicity calculate mol topology pred molecule admet. Combines 5 tools from 2 SCP server(s).
384 repo starsObserved in 2 repos
Research
alphafold_structure_pipeline
AlphaFold Structure Analysis Pipeline - AlphaFold pipeline: download predicted structure, predict pockets, extract sequence, and compute properties. Use this skill for computational biology tasks involving download alphafold structure run fpocket extract pdb sequence calculate pdb basic info. Combines 4 tools from 3 SCP server(s).
384 repo starsObserved in 2 repos
Research
binding_site_characterization
Binding Site Characterization - Characterize binding sites: predict pockets with fpocket and P2Rank, get binding site info from ChEMBL, and visualize. Use this skill for structural biology tasks involving run fpocket pred pocket prank get binding site by id visualize protein. Combines 4 tools from 3 SCP server(s).
384 repo starsObserved in 2 repos
Research
biomarker_discovery
Biomarker Discovery Pipeline - Discover biomarkers: TCGA differential expression, NCBI gene data, OpenTargets associations, and clinical relevance. Use this skill for precision medicine tasks involving tcga differential expression analysis get gene metadata by gene name get associated targets by disease efoId clinvar search. Combines 4 tools from 4 SCP server(s).
384 repo starsObserved in 2 repos
Research