Research skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

Virtual Embryo — atlas data + knowledge graph

Query the Virtual Embryo knowledge graph (mouse/human developmental biology: genes, anatomy, Theiler/Carnegie stages, gene expression, diseases, papers) and its 3D atlas catalog (anatomical OPT/light-sheet volumes + 3D spatial- transcriptomics datasets), and visualise those datasets in 3D with the volume3d / spatial3d live-view viewers. Public read-only HTTP API at https://kg.virtualembryo.ai — no auth, no key needed for reads. Use when the user asks about mouse/human embryo development, where a gene is expressed, an anatomical structure, a developmental stage, or wants to see/visualise the Virtual Embryo atlas or spatial-transcriptomics data.

473 repo starsObserved in 2 repos
Research
GitHub

codebase-memory-reference

This skill should be used when the user asks about "codebase-memory-mcp tools", "graph query syntax", "Cypher query examples", "edge types", "how to use search_graph", "query_graph examples", or needs reference documentation for the codebase knowledge graph tools.

472 repo starsObserved in 2 repos
Research
GitHub

zhihe-legal-research

连接智合AI法律大模型平台进行法律研究。本技能应在用户需要进行法律问题研究、查找法律法规、检索类似案例、或获取法律研究报告时使用。需要智合AI平台会员账号。

471 repo starsObserved in 1 repos
Research
GitHub

dbt-knowledgebase

Populate the knowledge base from dbt project research. Proposes entries across all 6 categories at org, project, and connection scopes.

470 repo starsObserved in 2 repos
Research
GitHub

molclaw-prolif-md

ProLIF MD trajectory analysis skill for protein-ligand interaction fingerprints with frame slicing and residue controls.

469 repo starsObserved in 1 repos
Research
GitHub

explain-this

Explain any digital artifact — a paper, PDF, article, code diff, or codebase — so the person actually understands it, not just skims it. Explanations are shaped by a persistent learner profile, gated by comprehension quizzes, and feed a spaced-repetition review loop. USE WHEN: explain this, explain this paper / PDF / article / diff / repo, help me understand this, what does this mean, what is this really saying, break this down, walk me through this, quiz me, review my cards, explain-this review, explain-this interview. NOT FOR: plain summarization when the user only wants a TL;DR, writing new content, or reviewing code for defects.

466 repo starsObserved in 2 repos
Research
GitHub

rethink-surveys

Design, critique, or scaffold surveys grounded in Caroline Jarrett, Dillman, and Tourangeau methods. Use when designing a new survey, critiquing an existing one, scoring or clustering responses, or turning questions into an app. Triggers on "survey", "questionnaire", "user research", "customer discovery", "intent capture", "interview script", "lint my survey", "score responses", or "how to ask better questions". When the bundled MCP server is connected, prefer its deterministic tools (`critique_survey`, `get_template`, `design_survey_session`, `score_response`, `cluster_responses`) over manual reasoning. Captures real past behavior over hypotheticals, supports text/voice/AI-interviewer modalities, and includes templates for event organizers, startup founders, and gig-economy workers.

466 repo starsObserved in 1 repos
Research
GitHub

analytical-grounding

Retrieve canonical pathway members, cell-type marker records, and genomic interval feature overlaps from declared analytical sources.

464 repo starsObserved in 2 repos
Research
GitHub

ancestry

Use local ancestry reference-panel tools for 1000 Genomes GRCh37/GRCh38 PCA projection, marker overlap QC, and qualitative reference-neighbor context.

464 repo starsObserved in 2 repos
Research
GitHub