developer-profile-builder
Build Top N GitHub developer profile CSVs for a project set using ClickHouse community_openrank, gh_user_info, location_info, and GitHub API fallback.
511 repo starsObserved in 1 repos
Research
Research skills
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
dynamo-conventional-rna-velocity
Run or adapt a conventional spliced/unspliced RNA velocity workflow in `dynamo`, including `Preprocessor` preprocessing, `dynamics`, low-dimensional `cell_velocities`, `VectorField`, topology / potential analysis, confidence-based correction, fate prediction, and optional animation. Use when analyzing conventional scRNA-seq `AnnData`, reproducing or adapting tutorial notebooks such as `200_zebrafish.ipynb`, or selecting between preprocessing, kinetics, vector-field, and fate stages for a reusable velocity pipeline.
504 repo starsObserved in 1 repos
Research
dynamo-differential-geometry-analysis
Run downstream differential-geometry analysis on a `dynamo` vector-field `AnnData`, including velocity, acceleration, curvature, Jacobian, regulatory-network, ddhodge pseudotime, and state-graph branches. Use when adapting the `403_Differential_geometry.ipynb` tutorial, extending a conventional spliced/unspliced RNA velocity workflow into vector calculus, or choosing among `method`, `mode`, `sampling`, `formula`, `adjmethod`, or `gene_order_method` branches.
504 repo starsObserved in 1 repos
Research
dynamo-in-silico-perturbation
Perform in silico gene perturbation on a dynamo vector-field AnnData to predict cell fate diversion after single or multi-gene activation or suppression, then visualize the results with streamline or quiver plots. Use when running dyn.pd.perturbation, predicting transcription factor perturbation effects, simulating gene knockdown or overexpression in scRNA-seq data, reproducing 502_perturbation_tutorial.ipynb, or choosing among pertubation_method, perturb_mode, and emb_basis branches.
504 repo starsObserved in 1 repos
Research
dynamo-lineage-appearance-analysis
Compare lineage appearance timing and its regulators on a precomputed `dynamo` vector-field `AnnData` using topography, graph potentials, Jacobian, and vector-calculus outputs. Use when checking whether one lineage appears earlier than its peers, curating fixed points, analyzing regulator pairs on a downstream-ready vector field, or adapting `400_tutorial_hsc_dynamo_megakaryocytes_appearance.ipynb`.
504 repo starsObserved in 1 repos
Research
dynamo-one-shot-total-rna-velocity
Run or adapt a one-shot total RNA velocity workflow in `dynamo` for metabolic-labeling or scNT-seq `AnnData`, including monocle preprocessing with an optional curated gene list, grouped moments by labeling time, Model-2 `dynamics`, `calculate_velocity_alpha_minus_gamma_s`, low-dimensional projection with `cell_velocities`, and optional streamline or phase-portrait plotting. Use when converting tutorials such as `301_tutorial_hsc_velocity.ipynb`, or when choosing between `one_shot_method` branches like `sci_fate` and `combined` and projection `method` branches like `cosine` and `pearson`.
504 repo starsObserved in 1 repos
Research
firecrawl-scraper
Deep web scraping, screenshots, PDF parsing, and website crawling using Firecrawl API
503 repo starsObserved in 16 repos
Research
Infinite Gratitude
Multi-agent research skill for parallel research execution (10 agents, battle-tested with real case studies).
503 repo starsObserved in 16 repos
Research
search-specialist
Expert web researcher using advanced search techniques and synthesis. Masters search operators, result filtering, and multi-source verification. Handles competitive analysis and fact-checking. Use PROACTIVELY for deep research, information gathering, or trend analysis.
503 repo starsObserved in 12 repos
Research
context7-auto-research
Automatically fetch latest library/framework documentation for Claude Code via Context7 API
503 repo starsObserved in 8 repos
Research