Research skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

busco-assessor

Genome, transcriptome, and protein completeness assessment via BUSCO v6. Agentic lineage routing from organism description, all three BUSCO modes, auto-lineage support, and full demo mode without the BUSCO binary.

1.04k repo starsObserved in 2 repos
Research

celltype-specificity-profiler

Given a gene and a single-cell atlas, compute how cell-type-specific its expression is — the tau specificity index, Sarle's expression bimodality coefficient, and the cell types that drive the signal; a pure analytic transform that chains downstream of scrna-embedding.

1.04k repo starsObserved in 2 repos
Research

fine-mapping

Statistical fine-mapping of GWAS loci using SuSiE, SuSiE-inf, and Approximate Bayes Factors to identify credible sets and posterior inclusion probabilities (PIPs) for causal variant discovery. SuSiE-inf adds an infinitesimal polygenic component for improved calibration at well-powered loci.

1.04k repo starsObserved in 2 repos
Research

organ-aging-studio

Interactive Goeminne proteomic aging clock with organ filters and per-protein contribution breakdown (protein NPX × coefficient). Agent- and demo-friendly.

1.04k repo starsObserved in 2 repos
Research

phylogenetics-builder

End-to-end ML phylogenetic tree inference — MSA, trimming, ModelFinder, IQ-TREE2/RAxML-NG.

1.04k repo starsObserved in 2 repos
Research

xena-tcga-gene-query

Query TCGA tumor biology through the ucscxenatoolspy API. Supports tumor-vs-normal differential expression, gene-gene correlation, survival association, and cancer catalogue browsing across 30+ TCGA cancer types.

1.04k repo starsObserved in 2 repos
Research

daily-papers-fetch

论文抓取(3 步流水线的第 1 步)。抓取 arXiv + HuggingFace 最新论文,打分筛选,富化信息, 输出到 /tmp/daily_papers_enriched.json 供后续 skill 使用。 触发词:"论文抓取"、"跑一下论文抓取" 支持多天模式:"过去3天论文推荐"、"过去一周论文推荐"、"过去一周的论文"、"抓 3 天的论文"、"最近5天"

1.03k repo starsObserved in 1 repos
Research

ai-tutor

Use when user asks to explain, break down, or help understand technical concepts (AI, ML, or other technical topics). Makes complex ideas accessible through plain English and narrative structure. Use the provided scripts to transcribe videos

1.03k repo starsObserved in 5 repos
Research

inno-deep-research

Comprehensive research assistant that synthesizes information from multiple sources with citations. Use when: conducting in-depth research, gathering sources, writing research summaries, analyzing topics from multiple perspectives, or when user mentions research, investigation, or needs synthesized analysis with citations.

1.03k repo starsObserved in 4 repos
Research

inno-reference-audit

This skill provides reference guidance for citation verification in academic writing. Use when the user asks about "citation verification best practices", "how to verify references", "preventing fake citations", or needs guidance on citation accuracy. This skill supports ml-paper-writing by providing detailed verification principles and common error patterns.

1.03k repo starsObserved in 4 repos
Research