biocontext-knowledge-queries
BioContext knowledge: UniProt, AlphaFold, STRING, Reactome, GO, PanglaoDB, PubMed, OpenTargets queries via ov.biocontext for gene annotation.
1.14k repo starsObserved in 3 repos
Research
Research skills
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
cellfate-pseudotime-gene-analysis
CellFateGenie: Adaptive Threshold Regression for pseudotime-associated gene discovery, Mellon density, lineage scoring via ov.single.Fate.
1.14k repo starsObserved in 3 repos
Research
scenic-gene-regulatory-network
SCENIC gene regulatory network: RegDiffusion GRN inference, cisTarget regulon pruning, AUCell scoring, RSS, regulon embeddings in OmicVerse.
1.14k repo starsObserved in 2 repos
Research
bulk-rna-seq-deseq2-analysis-with-omicverse
PyDESeq2 differential expression: ID mapping, DE testing, fold-change thresholding, and GSEA enrichment visualization in OmicVerse.
1.14k repo starsObserved in 1 repos
Research
cu-lengths-attention-flow
Bilingual guide for understanding how cu_lengths controls attention behavior across ViT and LLM stages, and how patch_positions scope differs between the two
1.14k repo starsObserved in 1 repos
Research
length-pool-sort-dataset
Bilingual guide for understanding LengthPoolSortDataset cross-rank length synchronization mechanism in multi-GPU training
1.14k repo starsObserved in 1 repos
Research
omicverse-visualization-for-bulk-color-systems-and-single-cell-d
OmicVerse plotting: volcano, venn, boxplot, embedding, density, heatmap families, dotplot, convex hull, stacked bar, and Forbidden City color palettes.
1.14k repo starsObserved in 1 repos
Research
agentsociety-hypothesis
Use when defining or revising research hypotheses, experiment groups, or comparison structure after literature review.
1.13k repo starsObserved in 1 repos
Research
agentsociety-literature-search
Use when academic literature needs to be gathered or refreshed for a research topic, especially at the beginning of a project.
1.13k repo starsObserved in 1 repos
Research
agentsociety-use-dataset
Use when external datasets need to be searched, inspected, or downloaded for experiments or analysis.
1.13k repo starsObserved in 1 repos
Research