unstructured-medical-text-miner
Mine unstructured clinical text from MIMIC-IV to extract diagnostic logic.
1.45k repo starsObserved in 2 repos
Research
Research skills
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
variant-annotation
Query and annotate gene variants from ClinVar and dbSNP databases. \n\.
1.45k repo starsObserved in 2 repos
Research
variant-pathogenicity-predictor
Integrate REVEL, CADD, PolyPhen scores to predict variant pathogenicity.
1.45k repo starsObserved in 2 repos
Research
wgcna-analysis
Use when building a weighted gene co-expression network from a bulk expression matrix and a sample group file, filtering variable genes by MAD, identifying co-expression modules with WGCNA, correlating modules with traits, and exporting module-level plots and gene tables. NOT for single-cell RNA-seq, differential expression testing, methylation analysis, or datasets that are too small for WGCNA after quality control.
1.45k repo starsObserved in 2 repos
Research
zinc-database
Access the ZINC (230M+ purchasable compounds) database when you need to look up compounds by ZINC ID/SMILES, run similarity/analog searches, or download 3D ready-to-dock structures for virtual screening and drug discovery.
1.45k repo starsObserved in 2 repos
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case-control-study-planner
Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurement planning, and bias-control checkpoints.
1.45k repo starsObserved in 1 repos
Research
comorbidity-common-immune-biomarker-research-planner
Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction. Use when a study links two clinically related diseases through shared DEGs, enrichment, PPI hub genes, machine-learning feature selection, public diagnostic validation, gene-regulatory networks, immune infiltration, and optional downstream follow-up. Covers five study patterns (shared-DEG discovery, hub-gene prioritization, machine-learning biomarker selection, immune/regulatory interpretation, multi-layer validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.
1.45k repo starsObserved in 1 repos
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cosmic-database
Access COSMIC to download mutation datasets, query Cancer Gene Census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources.
1.45k repo starsObserved in 1 repos
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experimental-data-analysis
Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible reports.
1.45k repo starsObserved in 1 repos
Research