Research skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

figure-first-paper-reader

Reads a paper figure by figure before re-integrating the full narrative, so the user can identify the core findings quickly and check whether each visual actually supports the authors' main claims. Always separate figure content, figure-linked claim, evidentiary strength, and unsupported interpretation. Never fabricate references, PMIDs, DOIs, figure content, panel labels, result values, or study details that were not actually provided.

1.45k repo starsObserved in 2 repos
Research
GitHub

find-paper-references

Automatically find references for academic paper Markdown files. Reads full paper text, identifies each knowledge point requiring citation (epidemiological data, mechanism descriptions, existing research conclusions, etc.), searches PubMed for 3-5 most relevant articles per kn...

1.45k repo starsObserved in 2 repos
Research
GitHub

fulltext-fetcher

Fetch and save the original HTML of scientific literature webpages when given a URL, DOI, or PubMed PMID (triggered when you need archival-grade page HTML for downstream parsing or review).

1.45k repo starsObserved in 2 repos
Research
GitHub

funding-trend-forecaster

Analyze funding abstracts and project metadata to identify topic shifts and forecast near-term grant priorities.

1.45k repo starsObserved in 2 repos
Research
GitHub

gene-database

Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or batch gene lists.

1.45k repo starsObserved in 2 repos
Research
GitHub

gene-info

Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file input. Invoke when the user asks for gene details, publication statistics, or needs to analyze a list of genes.

1.45k repo starsObserved in 2 repos
Research
GitHub

generic-phenotype-scoring-research-planner

Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular program. Use when a study centers on gene-set or feature-set definition, intersection with DEGs or candidate features, phenotype scoring, feature selection, diagnostic or stratification assessment, immune or cellular-resolution interpretation, network analysis, and optional orthogonal validation. Covers five study patterns (signature discovery, phenotype scoring, feature selection, immune/cellular interpretation, multi-layer validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.

1.45k repo starsObserved in 2 repos
Research
GitHub

geo-search-api

Search for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic data by keywords, organism, author, or specific fields.

1.45k repo starsObserved in 2 repos
Research
GitHub

gget

Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or keywords.

1.45k repo starsObserved in 2 repos
Research
GitHub

grant-funding-scout

NIH funding trend analysis to identify high-priority research areas.

1.45k repo starsObserved in 2 repos
Research
GitHub