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psychbull-open-science-and-transparency

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Use when planning and assembling the transparency package for a Psychological Bulletin submission — protocol preregistration (PROSPERO/OSF), TOP-compliant disclosure, and depositing the database, codebook, and analysis scripts. Covers transparency requirements; it does not run the analysis.

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Source SKILL.md: https://github.com/brycewang-stanford/Awesome-Journal-Skills/blob/HEAD/Psychological-Bulletin-Skills/skills/psychbull-open-science-and-transparency/SKILL.md

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Open Science & Transparency (psychbull-open-science-and-transparency)

Effective February 1, 2022, Psychological Bulletin requires transparent reporting for empirical work, including meta-analyses, aligned with the TOP Guidelines. Authors who submit quantitative analyses must supply their database, codebook, and relevant scripts, and must state whether the design/hypotheses were preregistered and where to access them. Build this as you go — it is not a last-minute add-on. (Verify the exact TOP level wording on the live page; see 待核实 in the source map.)

When to trigger

  • Before screening — to preregister the protocol
  • Assembling the data/code/materials package for submission
  • Answering the journal's transparency/availability statements
  • A reviewer asks where the database, codebook, or scripts live

Preregister the protocol (before screening)

  • Register the review protocol on PROSPERO (the systematic-review registry) or OSF Registries: question, eligibility criteria, search plan, coding plan, and the pre-specified analysis and moderators.
  • The manuscript must state whether work was preregistered and where to access it.
  • Masking note: Bulletin submissions registered on PROSPERO may attach registration details as an appendix, omitting author names and the registration number so review stays masked.
  • Clearly distinguish pre-specified (confirmatory) from exploratory analyses in the writeup.

The transparency package (TOP)

  1. Database — the coded effect-size dataset (one row per effect, with study identifiers and moderator codes), in an open format.
  2. Codebook — variable definitions and decision rules (from psychbull-inclusion-and-coding).
  3. Analysis scripts — code that reproduces every pooled estimate, moderator model, bias diagnostic, table, and figure.
  4. Materials — search strings/logs, screening records, and the PRISMA-flow inputs.
  5. Deposit to a trusted repository (OSF / institutional) with a persistent identifier (DOI); complete the journal's data-availability statement, explaining any restricted data.

Anti-patterns

  • Preregistering after screening (defeats the purpose)
  • "Available upon request" instead of a deposited, identifiable package
  • A dataset no one else could re-run (no codebook, undocumented variables)
  • Leaving the PROSPERO number / author names in an appendix during masked review
  • Blurring confirmatory and exploratory analyses

What transparency referees verify

As an APA flagship that adopted TOP-aligned reporting, Psychological Bulletin treats the transparency package as a reviewable deliverable, not a courtesy. The bar reviewers apply:

Transparency itemPassReject / desk-return trigger
Protocol timingPreregistered before screening, location statedRegistered after coding, or "available on request"
Database depositedOne-row-per-effect file with a DOINo data, or a spreadsheet no one else can run
Codebook depositedVariable definitions and decision rules includedUndocumented columns; codes unexplained
Scripts depositedReproduce every estimate, table, and figureNumbers in text that no script regenerates
Masking preservedPROSPERO appendix stripped of number and namesRegistration number visible during masked review

Worked vignette — assembling the package

Illustrative figures only. For the self-affirmation synthesis (k = 42, g = 0.34), the deposit under this skill's rules:

  • Protocol on OSF Registries timestamped before screening, listing eligibility, the search plan, and the delivery-format moderator as confirmatory.
  • Database: 51 rows (42 studies, 9 contributing multiple effects), each with study ID, g, variance, and moderator codes, in an open CSV with a DOI.
  • Codebook carried over from the inclusion-and-coding stage, defining all 23 variables.
  • Scripts: one metafor/robumeta script regenerates the pooled 0.34, the meta-regression (R²-analog 0.22), every bias diagnostic, the forest and funnel plots, and the summary table.
  • Masking: the PROSPERO/OSF appendix is anonymized, with the registration number and author names removed, so review stays masked.

Referee pushback → venue-specific fix

  • "Was this preregistered, and where?" → Add the registry link and the timestamp predating screening; state explicitly which analyses were confirmatory.
  • "'Data available on request' is insufficient." → Deposit the database, codebook, and scripts to a trusted repository with a persistent DOI and complete the availability statement.
  • "Confirmatory and exploratory analyses are blurred." → Separate them in both the manuscript and the deposited scripts so the distinction is auditable. (Confirm the exact TOP level on the live page.)

Output format

【Protocol】preregistered (PROSPERO/OSF) before screening? [Y/N] + where
【Masking】PROSPERO appendix anonymized (no number/names)? [Y/N]
【Database + codebook】deposited with DOI? [Y/N]
【Scripts】reproduce all estimates/exhibits? [Y/N]
【Availability statement】drafted; restricted data explained? [Y/N]
【Confirmatory vs exploratory】clearly separated? [Y/N]
【Next】psychbull-submission

Supplementary resources