Others skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

extracting-pii-entities

Detect PHI/PII spans in clinical text with OpenMed's extract_pii without altering the text. Use when the user wants to find names, dates, MRNs, phone numbers, addresses, SSNs, or other identifiers and get their offsets and labels (not redact them), inspect what would be removed before de-identifying, route spans to a custom redactor, normalize labels to a canonical taxonomy, or filter by confidence and language. Covers extract_pii, the PIIEntity fields, CANONICAL_LABELS / normalize_label, and how it differs from deidentify. Pairs before reidentifying-text and deidentifying-clinical-text.

4.65k repo starsObserved in 1 repos

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generating-synthetic-surrogates

Replace detected PHI with realistic, type-matched fake values in OpenMed so clinical notes stay readable and parseable instead of full of [REDACTED] markers. Use when the user wants surrogate names, MRNs, addresses, or dates rather than opaque masks, needs consistent fake identities across a document, must keep notes natural for downstream NLP, or wants to register a custom surrogate generator or provider. Covers deidentify(method="replace", consistent=True, seed=..., locale=...), register_label_generator, register_clinical_provider, and Anonymizer/AnonymizerConfig. Pairs with OpenMed deidentifying-clinical-text and configuring-privacy-policies.

4.65k repo starsObserved in 1 repos

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parsing-lab-values

Parse laboratory values and reference ranges from clinical text and flag results as low, normal, high, or critical with OpenMed. Use when the user needs to interpret lab results, compute abnormal flags, parse reference ranges like "135-145" or "<5", honor an originating-lab flag (H/L/critical), or turn extracted lab entities into structured high/low/critical signals. Covers openmed.clinical.parse_reference_range, derive_abnormal_flag, ReferenceRange, and AbnormalFlag, with UCUM/LOINC framing. Unit-agnostic — it does not convert units. Pairs after extracting-clinical-entities (lab entities from analyze_text).

4.65k repo starsObserved in 1 repos

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reconciling-problem-lists

Deduplicate and reconcile OpenMed-extracted conditions into one clean active problem list with clinical status (active / resolved / historical). Use after NER and context resolution when the user wants a problem list, condition reconciliation, dedup of synonymous diagnosis mentions, or active-vs-resolved status from a note. Covers clustering synonymous mentions into one concept, excluding negated mentions, applying clinical context (historical / hypothetical / recent) to set status, and emitting a USCDI-Problem-shaped list. SNOMED CT concept grounding is user-supplied and out-of-process. Hand-off: consume openmed.analyze_text Disease entities plus resolving-clinical-context axes. Pairs after extracting-clinical-entities.

4.65k repo starsObserved in 1 repos

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resolving-clinical-context

Assign negation, temporality, and uncertainty (the ConText axes) to clinical entities extracted by OpenMed, so "denies chest pain" is not counted as chest pain and "history of MI" is not counted as an active MI. Use after NER when the user needs assertion status, negation detection, family-history / hypothetical / historical flags, or ConText/NegEx-style classification before grounding entities to FHIR or a problem list. Covers openmed.clinical.resolve_negation / resolve_temporality / resolve_uncertainty / resolve_span_context / assert_context_axes, ClinicalAssertion, and the AFFIRMED/NEGATED, RECENT/HISTORICAL/HYPOTHETICAL, CERTAIN/UNCERTAIN constants. Pairs after extracting-clinical-entities.

4.65k repo starsObserved in 1 repos

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GitHub

ngs-atacseq-peaks-qc

Run or plan ATAC-seq QC, alignment, TSS enrichment, fragment-size, blacklist, peak-calling, consensus peak, and differential accessibility workflows.

4.61k repo starsObserved in 3 repos

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ngs-bcl-to-fastq

Validate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.

4.61k repo starsObserved in 2 repos

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ccal

Chinese lunar calendar with solar terms, traditional holidays, and almanac. Zero barrier — use with x-cmd or any calendar library. Use for "calendar", "lunar", "Chinese calendar", "节气", "黄历", "农历".

4.52k repo starsObserved in 1 repos

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GitHub

pet

Pet skill — placeholder, documentation to be added. Do not load as a real skill yet.

4.52k repo starsObserved in 1 repos

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GitHub

seedance-copyright

This skill should be used when a Seedance 2.0 prompt mentions named characters, franchises, studios, celebrities, public figures, private people, brand logos, copyrighted scenes, songs, voices, or real-person likeness workflows and needs an IP-safe rewrite.

4.45k repo starsObserved in 3 repos

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GitHub