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extraction-form

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Use when `evidence-review` has screened includes and needs a schema-aligned extraction table. **Trigger**: extraction form, extraction table, data extraction, 信息提取, 提取表. **Use when**: `evidence-review` 在 screening 后进入 extraction(C4),需要把纳入论文按字段落到 CSV 以支持后续 synthesis。 **Skip if**: 还没有 `papers/screening_log.csv` 或 protocol 未锁定。 **Network**: none. **Guardrail**: 严格按 schema 填字段;不要在此阶段写 narrative synthesis(那是 `synthesis-writer`)。

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Extraction Form

Transforms screened include rows plus protocol schema into the analysis table used by evidence-review.

Inputs

Required:

  • papers/screening_log.csv
  • output/PROTOCOL.md

Optional:

  • papers/paper_notes.jsonl

Output

  • papers/extraction_table.csv

Contract

The table must:

  • contain one row per included paper
  • preserve provenance columns (paper_id, title, year, url)
  • include protocol-defined extraction fields
  • keep narrative residue in notes, not in schema columns

Script boundary

scripts/run.py should:

  • parse the extraction schema from the protocol
  • filter include rows
  • materialize a normalized CSV

Acceptance

  • output exists
  • include rows map 1:1 to extraction rows
  • schema matches output/PROTOCOL.md

Non-goals

  • synthesis writing
  • bias scoring