methods-reporting
Check methods reporting against CONSORT, JARS, DA-RT standards.
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
Check methods reporting against CONSORT, JARS, DA-RT standards.
NLP analysis with perplexity scoring, burstiness, and entropy metrics
AI toolkit to parse, complete, and format academic references
Legal document annotation, versioning, and analysis platform
Data cleaning, transformation, and exploratory analysis with pandas
Review and polish LaTeX research papers for clarity and style
PDF parsing, text extraction, and document format conversion
Translate scientific PDFs with preserved math formatting via PDFMathTranslate
Takes a proofread or apsa-style report file (or any markdown file using **Original:** / **Recommended:** syntax) and rewrites the original source file with git merge conflict markers so the user can accept or reject each suggested edit using VS Code or Positron's built-in merge conflict UI. Branch names are "original" and "claude-edits". Use when asked to apply edits, insert conflict markers, or set up merge resolution for a copy-edit report. Supports an optional @sec-label argument to restrict markers to one section.
Cleans a Quarto (.qmd) file by replacing LaTeX holdovers with proper Quarto/Pandoc syntax so the document renders correctly to HTML, PDF (Typst/LaTeX), and Word. Fixes citations (\citep → [@key]), cross-references (\ref → @label), figures (\includegraphics → markdown), tables, text formatting (\textbf → **bold**), inline math (\( \) → $ $), hyperlinks (\href → [text](url)), footnotes (\footnote → ^[]), list environments, section headings, and R Markdown chunk options (dot-style → #| YAML). Use when asked to clean, fix, modernize, or port a Quarto or R Markdown document; when LaTeX commands appear in a .qmd file; when a document fails to render to Word or Typst; or when citations/cross-references do not appear in non-LaTeX output.