sc-fastq-qc
Load when checking raw single-cell FASTQ read quality (Phred / GC / adapter / length) before counting. Skip when reads are already counted (use sc-qc) or for bulk FASTQ (use bulkrna-read-qc).
Browse reusable Agent Skills, each with a clear purpose and practical guidance.
Load when checking raw single-cell FASTQ read quality (Phred / GC / adapter / length) before counting. Skip when reads are already counted (use sc-qc) or for bulk FASTQ (use bulkrna-read-qc).
Load when extracting gene programs (NMF / cNMF factorisation) and per-cell program usage scores from a non-negative scRNA AnnData. Skip when ranking marker genes per cluster (use sc-markers) or for inferring TF → target regulons (use sc-grn).
Inventory, extract, and analyze tranches of declassified UAP/UFO files — including war.gov/UFO/ "PURSUE" releases, FBI Vault, NARA boxes, and AARO publications. Use this skill whenever the user points at a folder of UAP/UFO/declassified PDFs, asks "what's in this release?", references war.gov/UFO/, AARO, PURSUE, FOIA tranches, FBI 62-HQ-83894, or asks for keyword/entity/redaction analysis across a corpus of declassified documents — even if they don't explicitly ask for an "analysis." Also triggers on requests to compare tranches, summarize a single declassified PDF, classify documents by agency, or surface (b)(1)/(b)(6)/NOFORN redaction patterns. Produces a standardized inventory.csv, per-file digest, entities.json, and REPORT.md.
Search a video library with natural language via the VSS Pipeline Manager — upload a video (POST /videos), generate its embeddings (POST /videos/search-embeddings/{id}), then run a query (POST /search/query) with optional tag and time filters and read the ranked clip results. Use when the user says "search my videos", "find <thing> in the videos", "when did X happen", or wants to ingest/index a video for search. Requires a search-capable deployment (--search, --dual, or --unified).
Expert in script-to-video production pipelines for Apple Silicon Macs. Specializes in hybrid local/cloud workflows, LoRA training for character consistency, motion graphics generation, and artist commissioning. Activate on 'AI video production', 'script to video', 'video generation pipeline', 'character consistency', 'LoRA training', 'cloud GPU', 'motion graphics', 'Wan I2V', 'InVideo alternative'. NOT for real-time video editing, video compositing (use DaVinci/Premiere), audio production, or 3D modeling (use Blender/Maya).
Professional CV and resume builder transforming career narratives into ATS-optimized, multi-format resumes. Integrates with career-biographer for data and competitive-cartographer for positioning. Generates PDF, DOCX, LaTeX, JSON Resume, HTML, and Markdown. Activate on 'resume', 'CV', 'ATS optimization', 'job application'. NOT for cover letters, portfolio websites (use web-design-expert), LinkedIn optimization, or interview preparation.
Generate, fill, and assemble PDF documents at scale. Handles legal forms, contracts, invoices, certificates. Supports form filling (pdf-lib), template rendering (Puppeteer, LaTeX), digital signatures (DocuSign), and document assembly. Use for legal tech, HR automation, invoice generation. Activate on "PDF generation", "form filling", "document automation", "digital signatures". NOT for simple PDF viewing, basic file conversion, or OCR text extraction.
Use when the user wants a paper audited for integrity issues — image misuse, numerical anomalies, logical gaps — and needs a reviewable evidence report. Works on external papers (PDF / DOI / arXiv) and on outputs from a local paper-writer run. Single-stage skill.
Renders Mermaid diagrams to SVG, PNG, and PDF in both web and offline contexts. Covers client-side lazy loading, SSR trade-offs, CLI batch export, and native Rust rendering. Use when exporting diagrams to images, optimizing Mermaid rendering performance on web pages, setting up CI/CD diagram pipelines, or choosing a rendering library. Activate on "render mermaid", "export diagram", "mermaid to png", "mermaid to svg", "mermaid performance", "diagram export". NOT for writing Mermaid syntax (use mermaid-graph-writer), general image processing, or non-Mermaid diagram formats.
Expert photography composition critic grounded in graduate-level visual aesthetics education, computational aesthetics research (AVA, NIMA, LAION-Aesthetics, VisualQuality-R1), and professional image analysis with custom tooling. Use for image quality assessment, composition analysis, aesthetic scoring, photo critique. Activate on "photo critique", "composition analysis", "image aesthetics", "NIMA", "AVA dataset", "visual quality". NOT for photo editing/retouching (use native-app-designer), generating images (use Stability AI directly), or basic image processing (use clip-aware-embeddings).