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failure-diagnosis

DevOps & Security
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Diagnose deployment failures, container crashes, and networking issues using structured pattern matching on logs and container state. Use when a deployment fails, a container crashes or exits unexpectedly, or the app is unreachable after deployment.

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Source SKILL.md: https://github.com/nixopus/nixopus/blob/HEAD/api/skills/failure-diagnosis/SKILL.md

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Failure Diagnosis

When diagnosing a deployment issue, work through the relevant section based on the symptom. Use the pattern tables to match log output before hypothesizing.

Build Failure Patterns

After calling get_deployment_logs, scan the output for these patterns.

Node.js

Log patternRoot causeFix
ENOMEM or JavaScript heap out of memoryNode ran out of memory during buildAdd NODE_OPTIONS=--max-old-space-size=4096 as build-time env var
ERR_MODULE_NOT_FOUND or Cannot find moduleMissing dependency or wrong import pathCheck package.json dependencies; verify the module is not dev-only if pruned
error TS followed by file path and line numberTypeScript compilation errorRead the referenced file — usually a type mismatch or missing type package
sharp: Installation error or something went wrong installing the "sharp" packageMissing libvips system dependencyAdd RUN apk add --no-cache vips-dev (alpine) or RUN apt-get install -y libvips-dev (debian) before npm install
gyp ERR! or node-gyp rebuildNative addon compilation failed — missing python3, make, or g++Add build tools: RUN apk add --no-cache python3 make g++ (alpine) or RUN apt-get install -y python3 make g++ (debian)
npm warn ERESOLVE or Could not resolve dependencyDependency version conflictAdd --legacy-peer-deps to install command, or fix the conflicting version ranges
Error: EACCES: permission deniedDockerfile runs as non-root but writes to root-owned directoryAdd RUN chown -R node:node /app before switching to non-root user
next build fails with Module not found for @/ pathsNext.js path alias not resolvingVerify tsconfig.json paths and that all source files are copied before build
.next/standalone directory missing after buildoutput: "standalone" not set in next.config.*Add output: "standalone" to Next.js config

Python

Log patternRoot causeFix
ModuleNotFoundError: No module namedPackage not in requirements or venv not activatedVerify the module is listed in requirements.txt / pyproject.toml; check Dockerfile uses the same Python that pip installed to
error: subprocess-exited-with-error during pip installNative extension compilation failedInstall system build deps: RUN apt-get install -y build-essential libpq-dev libffi-dev
pg_config executable not foundpsycopg2 needs PostgreSQL client libsUse psycopg2-binary instead, or install libpq-dev
Could not find a version that satisfiesPip version conflict or typo in package nameCheck package name spelling and version constraints
RuntimeError: uvloop does not support WindowsWrong base image platformEnsure Dockerfile uses a linux base image
Permission denied: '/app'Non-root user can't write to workdirAdd RUN chown -R appuser:appuser /app

Go

Log patternRoot causeFix
cannot find module providing packageMissing dependency or wrong module pathRun go mod tidy — the go.sum may be stale
cgo: C compiler "gcc" not foundCGO enabled but no C compiler in imageEither CGO_ENABLED=0 for static builds, or install gcc and musl-dev
signal: killed during buildOOM during compilationIncrease build memory or reduce parallelism with -p 1 flag
main.go:X: undefined:Function or variable not exported or wrong packageCheck capitalization (Go exports are uppercase) and build tags

Rust

Log patternRoot causeFix
error[E0433]: failed to resolveMissing crate or wrong import pathCheck Cargo.toml dependencies
Killed or signal: 9 during cargo buildOOM during compilation — Rust builds are memory-intensiveUse cargo build --release -j 2 to limit parallelism, or increase build memory
linking with cc failedMissing system libraries for C bindingsInstall required -dev packages (e.g., libssl-dev, pkg-config)
error: linker cc not foundNo C linker in imageInstall build-essential or gcc

Java

Log patternRoot causeFix
java.lang.OutOfMemoryError: Java heap spaceMaven/Gradle OOM during buildSet MAVEN_OPTS=-Xmx1024m or GRADLE_OPTS=-Xmx1024m
ERROR: JAVA_HOME is not setJDK not installed or JAVA_HOME not configuredEnsure Dockerfile uses a JDK base image (not JRE) for build stage
Could not find artifactMissing Maven dependency or wrong repository URLCheck pom.xml repositories and dependency coordinates
Compilation failure with source/target versionJava source version mismatchMatch source/target in pom.xml to the JDK version in the base image

General Dockerfile

Log patternRoot causeFix
COPY failed: file not found in build contextSource path in COPY doesn't exist, or .dockerignore excludes itVerify the path exists and is not in .dockerignore
failed to solve: not found after FROM ... ASMulti-stage stage name typo or missing stageCheck that the stage name in COPY --from= matches a FROM ... AS stage
manifest unknown or not found in registryBase image tag doesn't existVerify the image:tag exists on Docker Hub / registry
executor failed running: No such file or directoryScript referenced in CMD/ENTRYPOINT doesn't exist or has wrong line endingsCheck the file exists in the final stage; convert CRLF to LF if built on Windows
Error response from daemon: conflictContainer name already in usePrevious deployment didn't clean up — remove the old container first

Container Runtime Failures

After a deployment succeeds (image built) but the container crashes or misbehaves.

Exit Codes

Exit codeSignalMeaning
0—Clean exit — process finished normally (unexpected for a long-running server)
1—Generic application error — check application logs
126—Command found but not executable — check file permissions on entrypoint
127—Command not found — entrypoint binary missing from final image stage
137SIGKILL (9)Killed externally — usually OOM killer or docker stop timeout
139SIGSEGV (11)Segmentation fault — native code crash, corrupted memory
143SIGTERM (15)Graceful termination — normal docker stop

Exit codes 128+N mean the process was killed by signal N.

Container Inspect Signals

Use container_inspect to check these fields:

FieldConditionMeaning
oom_killedtrueContainer exceeded memory limit — increase memory or fix memory leak
restart_count> 5 in last hourCrash loop — container starts, crashes, restarts repeatedly
health_statusunhealthyHealthcheck endpoint failing — check if the app's health endpoint is reachable inside the container
health_statusstarting for > 60sApp takes too long to boot — slow startup or stuck initialization

Common Runtime Patterns

Scan get_container_logs or get_application_logs for these:

Log patternRoot causeFix
EADDRINUSE or address already in usePort conflict — another process holds the portCheck for duplicate containers, or the app spawns a child that binds first
ECONNREFUSED to database hostDatabase not reachable from container networkVerify DB host is correct for Docker networking (use service name, not localhost)
undefined or TypeError: Cannot read properties of undefined (Node)Missing environment variableCross-reference app env var usage with configured vars via container_exec ["env"]
KeyError or os.environ error (Python)Missing environment variableSame — check configured env vars
ENOENT: no such file or directoryExpected file not in containerVerify COPY in Dockerfile includes the file; check .dockerignore
permission denied on file operationsNon-root user lacks write accesschown the directory in Dockerfile or use a writable volume
FATAL: password authentication failedWrong database credentialsVerify DATABASE_URL or individual DB credential env vars
EMFILE: too many open filesFile descriptor limit reachedAdd ulimits in compose or increase container fd limit
ERR_DLOPEN_FAILED (Node)Native module compiled for wrong architectureRebuild native modules inside the Docker build (don't copy host node_modules)

Crash Loop Detection

A container is in a crash loop when:

  1. restart_count > 3 in the last 10 minutes
  2. Container logs show the same error repeating
  3. Container uptime resets to 0 repeatedly

To diagnose a crash loop:

  1. get_container_logs for the last 100 lines
  2. container_inspect for oom_killed, exit code, restart count
  3. If OOM: container_stats to see memory usage trend
  4. If exit 1: search logs for the first error after startup
  5. If exit 137 but not OOM: check host memory via machine-agent delegation

Networking Failures

When the app runs but is not reachable externally.

Port Mismatch Diagnosis

Four values must agree — a mismatch at any level causes unreachable apps:

LayerHow to checkTool
App listen portcontainer_exec ["ss", "-tlnp"] or grep source for .listen(container_exec
Dockerfile EXPOSEcontainer_inspect → portscontainer_inspect
Nixopus app config portget_application → port fieldget_application
Proxy upstream portproxy_config → upstreamproxy_config

If any disagree, the app is unreachable. The app listen port is the source of truth — all others must match it.

Reachability Matrix

Use this decision tree when the app is reported as unreachable:

CheckToolPass meansFail means
External URL respondshttp_probe on public URLApp is reachable (problem may be intermittent)Continue to next check
App responds inside containercontainer_exec ["curl", "-s", "localhost:PORT"]App is running; problem is proxy/DNS/networkApp itself is down — check container logs
Container is runninglist_containers / get_containerContainer exists and is upContainer crashed — see Container Runtime Failures
DNS resolves to servernetwork_diagnostics with type dnsDomain points to correct IPDNS misconfigured — check domain settings
Port is open on hostnetwork_diagnostics with type portTraffic reaches the serverFirewall or port not published

Proxy and TLS Issues

SymptomRoot causeDiagnosis
502 Bad GatewayProxy can't reach upstream containerproxy_config to check upstream; container_exec curl to verify app is listening
503 Service UnavailableApp overloaded or not readycontainer_stats for CPU/memory; check if app has finished starting
504 Gateway TimeoutUpstream too slow to respondApp may be stuck — container_exec ["ps", "aux"] to check for hung processes
SSL_ERROR or ERR_CERT_AUTHORITY_INVALIDTLS certificate issueproxy_config to check tls_enabled; Caddy auto-TLS may need valid DNS first
Redirect loop (ERR_TOO_MANY_REDIRECTS)App and proxy both forcing HTTPS redirectDisable app-level HTTPS redirect — let the proxy handle TLS termination

Container-to-Service Connectivity

When the app can't reach its dependencies (database, cache, external API):

  1. container_exec ["nslookup", "<hostname>"] — DNS resolution
  2. container_exec ["curl", "-s", "-o", "/dev/null", "-w", "%{http_code}", "<url>"] — HTTP reachability
  3. network_diagnostics with type port — TCP connectivity
  4. Check if both containers are on the same Docker network via container_inspect → networks

Diagnostic Decision Tree

Start here. Match the symptom, follow the path.

Symptom: build_failed

  1. get_application_deployments to find the failed deployment
  2. get_deployment_logs for the full build output
  3. Scan logs against Build Failure Patterns tables above
  4. If match found: apply the documented fix
  5. If no match: search for the first error or Error line — that's usually the root cause (earlier lines are often cascading failures)

Symptom: container exited / crash loop

  1. get_application to confirm deployment status
  2. list_containers to find the container (it may have been removed on crash)
  3. container_inspect for exit code, oom_killed, restart_count, health_status
  4. Map exit code using Exit Codes table
  5. get_container_logs (or get_application_logs if container is gone) for the last error
  6. Match log output against Common Runtime Patterns table
  7. If OOM: container_stats to see current memory usage vs limit

Symptom: app unreachable

  1. http_probe the public URL — if it responds, problem is intermittent or resolved
  2. get_application to confirm the app exists and has a deployment
  3. list_containers to check container is running
  4. container_exec ["curl", "-s", "-o", "/dev/null", "-w", "%{http_code}", "localhost:PORT"] — internal reachability
  5. If internal works but external doesn't: proxy_config for upstream mismatch, then Port Mismatch Diagnosis
  6. If internal fails too: check container logs for startup errors
  7. If container is running but not listening: container_exec ["ss", "-tlnp"] to see what ports are bound

Symptom: intermittent errors / slow responses

  1. container_stats for CPU and memory pressure
  2. get_container_logs with recent timeframe — look for error spikes
  3. If memory > 80% of limit: approaching OOM, recommend increasing memory or fixing leak
  4. If CPU > 90%: app is compute-bound, check for infinite loops or missing caching
  5. http_probe multiple times to confirm intermittent pattern
  6. Check container_inspect → restart_count for silent crash-restarts

Related Skills

  • domain-tls-routing — For domain resolution, TLS certificate, and reverse proxy routing issues specifically
  • pre-deploy-checklist — Run before deployment to catch issues that would cause the failures diagnosed here