Apps & Automation skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

molmim-nim

Use this skill for MolMIM, NVIDIA's BioNeMo NIM microservice for small-molecule latent-space generation and optimization. Invoke for MolMIM, molecular embeddings, hidden states, latent decoding, sampling around a seed SMILES, CMA-ES guided molecule generation, QED or plogP optimization, hosted NVIDIA API calls, or local Docker deployment.

371 repo starsObserved in 2 repos
Apps & Automation

msa-search-nim

Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env searches, A3M or FASTA alignments, paired MSA search for complexes, PDB70 structural templates, hosted NVIDIA API calls, or local Docker deployment.

371 repo starsObserved in 2 repos
Apps & Automation

openfold2-nim

Use this skill for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure prediction. Invoke whenever the user mentions OpenFold2, AlphaFold2-like monomer folding, protein sequence-to-structure prediction, A3M MSAs, mmCIF templates, hosted NVIDIA API calls, or local Docker deployment.

371 repo starsObserved in 2 repos
Apps & Automation

openfold3-nim

Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or needs protein, protein-ligand, protein-DNA/RNA, or multi-chain complex prediction with the hosted NVIDIA API or local Docker NIM. Covers endpoint choice, auth, request payloads, output artifacts, confidence scores, and local container setup.

371 repo starsObserved in 2 repos
Apps & Automation

parabricks

Route NVIDIA Parabricks pbrun tools, assess GPU/runtime readiness, and provide version-aware command guidance for FASTQ/BAM processing, RNA-seq, variant calling, BAM QC, and GVCF workflows. Do NOT use for inspecting or accelerating whole pipelines — use genomics-workflow-acceleration.

371 repo starsObserved in 2 repos
Apps & Automation

proteinmpnn-nim

Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Use for ProteinMPNN, inverse folding, sequence design, backbone redesign, fixed chains/residues, omit_AAs, sampling temperature, soluble model, hosted NVIDIA API, local Docker, PDB input, and multi-FASTA output.

371 repo starsObserved in 2 repos
Apps & Automation

rfdiffusion-nim

Run RFDiffusion protein backbone design via NVIDIA NIM. Use for de novo protein backbones, motif scaffolding, binder design, hotspot residues, contigs syntax, diffusion steps, hosted NVIDIA API calls, local Docker deployment, and PDB backbone outputs for ProteinMPNN sequence design.

371 repo starsObserved in 2 repos
Apps & Automation

stripe-patterns

Stripe payment integration patterns for checkout flows, webhooks, and subscriptions. Use when implementing payment flows, handling Stripe webhooks, working with subscriptions or invoices, testing payment functionality, or handling refunds and disputes. Do NOT use for non-payment API routes.

371 repo starsObserved in 2 repos
Apps & Automation

activity-record

Query and orchestrate Arkloop Activity Record local activity data. Covers browser history, search terms, screen time, bluetooth, shell commands, window focus, keyboard, mouse, clipboard, Codex sessions, and optional Screenpipe integration.

371 repo starsObserved in 1 repos
Apps & Automation

byted-acep-api

通过本地 Python CLI 和 OpenAPI 客户端管理、排查火山云手机资源。适用于查询实例和资源、截图、执行命令、查看任务、检查应用、主机和机房容量、标签、DNS、路由,以及操作已授权的测试云手机实例。

371 repo starsObserved in 1 repos
Apps & Automation