Apps & Automation skills

Browse reusable Agent Skills, each with a clear purpose and practical guidance.

benchling-integration

Integrate with the Benchling R&D platform when you need to programmatically manage registry entities, inventory, ELN entries, workflows, events, or data warehouse analytics via API/SDK.

1.45k repo starsObserved in 2 repos
Apps & Automation

biodbnet-api

Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. Use when you need to convert gene/protein IDs, find pathways, or retrieve biological annotations via bioDBnet.

1.45k repo starsObserved in 2 repos
Apps & Automation

bioservices

Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially for cross-database analysis and identifier mapping.

1.45k repo starsObserved in 2 repos
Apps & Automation

cellxgene-census

Programmatically query the CZ CELLxGENE Census (61M+ cells) when you need cross-tissue, disease, or cell-type expression data for population-scale queries and reference atlas comparisons.

1.45k repo starsObserved in 2 repos
Apps & Automation

dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, process FASTQ/BAM/VCF, for developing and executing genomics pipelines.

1.45k repo starsObserved in 2 repos
Apps & Automation

lamindb

This skill is applicable when using LaminDB. LaminDB is an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR-compliant. It is suitable for managing biological datasets (scRNA-seq, spatial transcriptomics, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakes, or ensuring data lineage and reproducibility in biological research. It covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integration with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.

1.45k repo starsObserved in 2 repos
Apps & Automation

start-elasticsearch

This skill can help to start Elasticsearch locally, using start-local project from Elastic.

1.45k repo starsObserved in 1 repos
Apps & Automation

tinyworld-opacity-torch

Use when changing ghost boards, multiplayer preview boards, panning, ghost visibility, jigsaw reveal, or any visibility behavior around the active Tiny World board.

1.44k repo starsObserved in 1 repos
Apps & Automation

tinyworld-settings

Use when changing Tiny World Builder Settings modal tabs, panels, controls, rendering/world/material/crowd/AI settings, or settings accessibility.

1.44k repo starsObserved in 1 repos
Apps & Automation

tinyworld-tinyverse-race-track

Use when changing the Tinyverse ground-surface race track, perimeter bridge loop, rally karts, or poser-surface show/hide hook.

1.44k repo starsObserved in 1 repos
Apps & Automation